nextcode Python SDK
Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services.
Installation
$ pip install nextcode-sdk -U
$ pip install nextcode-sdk[jupyter] -U
Getting started
import nextcode
client = nextcode.Client(api_key="xxx")
qry = client.service("query")
qry.status()
qry.get_queries()
qry.get_query(query_id)
qry.list_templates()
Jupyter notebooks
To start using the python sdk in Jupyter Notebooks you will first need to install it using the jupyter extras and then load the gor % magic extension.
! pip install nextcode-sdk[jupyter] -U
%load_ext nextcode
Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a GOR_API_KEY and GOR_PROJECT. If you are running outside such an environment you will need to configure your environment accordingly:
%env GOR_API_KEY="***"
%env GOR_API_PROJECT="test_project"
# optionally set the LOG_QUERY environment variable to get more information about running queries.
%env LOG_QUERY=1
Now you can run gor with the following syntax:
# simple one-liner
%gor gor #dbsnp# | top 100
# one-liner which outputs to local variable as a pandas dataframe
results = %gor gor #dbsnp# | top 100
# multi-line statement
%%gor
gor #dbsnp#
| top 100
# multi-line statement which writes results into project folder
%%gor user_data/results.tsv <<
nor #dbsnp#
| top 100
# output results to local variable as a pandas dataframe
%%gor myvar <<
nor #dbsnp#
| top 100
# read from a pandas dataframe in a local variable
%%gor
nor [var:myvar]
| top 100
# reference a local variable
num = 10
%%gor
nor [var:myvar]
| top $num
Release files for nextcode-sdk 2.1.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| nextcode_sdk-2.1.2.tar.gz | 56.7 kB | Without provenance | Details for nextcode_sdk-2.1.2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| nextcode_sdk-2.1.2-py3-none-any.whl | Python 3 | none | any | Details for nextcode_sdk-2.1.2-py3-none-any.whl |
Total release size: 133.3 kB
Release files / nextcode_sdk-2.1.2.tar.gz
| Download URL | nextcode_sdk-2.1.2.tar.gz |
|---|---|
| Size | 56.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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No |
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poetry/1.8.4 CPython/3.10.15 Linux/5.10.219-208.866.amzn2.x86_64
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Release files / nextcode_sdk-2.1.2-py3-none-any.whl
| Download URL | nextcode_sdk-2.1.2-py3-none-any.whl |
|---|---|
| Size | 76.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.4 CPython/3.10.15 Linux/5.10.219-208.866.amzn2.x86_64
|
Security for nextcode-sdk 2.1.2
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