Skip to main content

Nextstrain command-line tool

Project description

Nextstrain CLI

This is the source code repository for a program called nextstrain, the Nextstrain command-line interface (CLI). It aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

Get started using the Nextstrain CLI by reading the documentation, which includes installation and usage information.

If you'd like to contribute to development, the development docs should help you get going. We're glad you'd like to contribute!

If you need help (or just want to say hi!), open an issue or send us an email to hello@nextstrain.org.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for nextstrain-cli, version 3.0.3
Filename, size File type Python version Upload date Hashes
Filename, size nextstrain_cli-3.0.3-py3-none-any.whl (57.8 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size nextstrain-cli-3.0.3.tar.gz (44.3 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page