Nextstrain command-line tool
Project description
# Nextstrain CLI
This is the source code repository for a program called nextstrain, the Nextstrain command-line interface (CLI). It aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like [Augur][] and [Auspice][] across computing environments such as [Docker][], [Conda][], and [AWS Batch][].
Get started using the Nextstrain CLI by reading the [documentation][], which includes installation and usage information.
If you’d like to contribute to development, the [development docs][] should help you get going. We’re glad you’d like to contribute!
If you need help (or just want to say hi!), [open an issue][] or send us an email to <hello@nextstrain.org>.
[Augur]: https://docs.nextstrain.org/projects/augur/ [Auspice]: https://nextstrain.github.io/auspice/ [AWS Batch]: https://aws.amazon.com/batch/ [Docker]: https://docker.com [Conda]: https://docs.conda.io/en/latest/miniconda.html [documentation]: https://docs.nextstrain.org/projects/cli/ [development docs]: https://docs.nextstrain.org/projects/cli/page/development/ [open an issue]: https://github.com/nextstrain/cli/issues/new
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