Nextstrain command-line tool

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  • License: MIT License (MIT)
  • Author: Thomas Sibley
  • Requires: Python >=3.8
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Project description

Nextstrain CLI

This is the source code repository for a program called nextstrain, the Nextstrain command-line interface (CLI). It aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing platforms such as Docker, Conda, Singularity, and AWS Batch.

Get started using the Nextstrain CLI by reading the documentation, which includes installation and usage information.

If you'd like to contribute to development, the development docs should help you get going. We're glad you'd like to contribute!

If you need help (or just want to say hi!), open an issue or send us an email to hello@nextstrain.org.

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Avatar for huddlej from gravatar.com huddlej Avatar for jameshadfield from gravatar.com jameshadfield Avatar for nextstrain-bot from gravatar.com nextstrain-bot Avatar for rneher from gravatar.com rneher Avatar for trs from gravatar.com trs Avatar for trvrb from gravatar.com trvrb Avatar for victorlin0 from gravatar.com victorlin0

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  • License: MIT License (MIT)
  • Author: Thomas Sibley
  • Requires: Python >=3.8
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10.4.1

10.4.0

10.3.0

10.2.1.post1

10.2.0

10.1.0

10.0.0

9.0.0

8.5.4

8.5.3

8.5.2

8.5.1

8.5.0

8.4.0

8.3.0

8.2.0

8.0.1

This version

8.0.0

7.4.0

7.3.0.post1

7.2.0

7.1.0

7.0.1

7.0.0

6.2.1

6.2.0

6.1.0.post1

6.1.0

6.0.3

6.0.2

6.0.0

5.0.1

5.0.0

5.0.0.dev1 pre-release

5.0.0.dev0 pre-release

4.2.0

4.1.1

4.1.0

4.0.0

3.2.5

3.2.4

3.2.3

3.2.2

3.2.1

3.2.0

3.1.1

3.1.0

3.0.6

3.0.5

3.0.4

3.0.3

3.0.2

3.0.1

3.0.0

2.0.0.post1

2.0.0

1.16.7

1.16.6

1.16.5

1.16.4

1.16.3

1.16.2

1.16.1

1.16.0

1.15.0

1.14.0

1.14.0b1 pre-release

1.13.0

1.12.0

1.11.2

1.11.1

1.11.0

1.10.2

1.10.1

1.10.0

1.9.1

1.9.0

1.8.1

1.8.0

1.7.3

1.7.2

1.7.1

1.7.0

1.6.1

1.6.0

1.5.0

1.4.1

1.4.0

1.3.0

1.2.0

1.1.9

1.1.8

1.1.7

1.1.6

1.1.5

1.1.4

1.1.3

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