Automatic inference of neighboring cells based on their Delaunay triangulation.
Project description
Nfinder
Automatic inference of neighboring cells based on their Delaunay triangulation.
Dependencies
nfinder was tested with:
- python = 3.8.5
- napari = 0.4.12
- numpy = 1.21.2
- pandas = 1.3.4
- scikit-image = 0.18.3
- scipy = 1.7.1
Installation
It can be installed with pip from PyPI:
pip install nfinder
Usage
For usage examples, please check out the notebook in our GitHub repository.
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