ngio 0.1.0

Next Generation file format IO

NGIO - Next Generation file format IO

NGIO is a Python library to streamline OME-Zarr image analysis workflows.

Main Goals:

• Abstract object base API for handling OME-Zarr files
• Powefull iterators for processing data using common access patterns
• Tight integration with Fractal's Table Fractal
• Validate OME-Zarr files

To get started, check out the Getting Started guide. Or checkout our Documentation

🚧 Ngio is Under active Development 🚧

Roadmap

Feature	Status	ETA	Description
Metadata Handling	✅		Read, Write, Validate OME-Zarr Metadata (0.4 supported, 0.5 ready)
OME-Zarr Validation	✅		Validate OME-Zarr files for compliance with the OME-Zarr Specification + Compliance between Metadata and Data
Base Image Handling	✅		Load data from OME-Zarr files, retrieve basic metadata, and write data
ROI Handling	✅		Common ROI models
Label Handling	✅	Mid-September	Based on Image Handling
Table Validation	✅	Mid-September	Validate Table fractal V1 + Compliance between Metadata and Data
Table Handling	✅	Mid-September	Read, Write ROI, Features, and Masked Tables
Basic Iterators	Ongoing	End-September	Read and Write Iterators for common access patterns
Base Documentation	✅	End-September	API Documentation and Examples
Beta Ready Testing	✅	End-September	Beta Testing; Library is ready for testing, but the API is not stable
Mask Iterators	Ongoing	October	Iterators over Masked Tables
Advanced Iterators	Not started	October	Iterators for advanced access patterns
Parallel Iterators	Not started	End of the Year	Concurrent Iterators for parallel read and write
Full Documentation	Not started	End of the Year	Complete Documentation
Release 1.0 (Commitment to API)	Not started	End of the Year	API is stable; breaking changes will be avoided