Skip to main content

Framework for data-driven generation of neuroglancer states.

Project description

Please find documentation here.

This package offers a set of tools designed to ease the programmatic generation of Neuroglancer states and close the loop between analysis and data exploration. The key tool is the notion of a StateBuilder that is easily configured to map dataframes into neuroglancer states. See the example notebook for what it can do an how it can simplify the process of making neuroglancer states, including setting annotations, segmentations, colors, tags, and more. It's also designed to operate easily with DashDataFrame to interactively explore complex data.

All code in the 'nglite' submodule is stripped down from v1.1.6 of the 'neuroglancer' python module from the fantastic Neuroglancer suite by Jeremy Maitin-Shepard from the Google connectomics team. Anything that works is their fault, anything that doesn't is ours. Please do not use this as a replacement for neuroglancer on pypi, which has more capabilities, albeit more sensitive installation procedures, than are needed for this work.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

nglui-3.6.0.tar.gz (57.8 kB view details)

Uploaded Source

Built Distribution

nglui-3.6.0-py3-none-any.whl (75.9 kB view details)

Uploaded Python 3

File details

Details for the file nglui-3.6.0.tar.gz.

File metadata

  • Download URL: nglui-3.6.0.tar.gz
  • Upload date:
  • Size: 57.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-httpx/0.27.2

File hashes

Hashes for nglui-3.6.0.tar.gz
Algorithm Hash digest
SHA256 8c498eeb1c0e0191859b034f9c36d7e235d3cbdcea13a290e863bb5fffa3a7c5
MD5 a3111bfd76cbc3f2764e7f474f0253cc
BLAKE2b-256 ae7f3e96f9d1d9f4f5733004be3d602d5a9a20878da9c58bd147df57b7c9861d

See more details on using hashes here.

File details

Details for the file nglui-3.6.0-py3-none-any.whl.

File metadata

  • Download URL: nglui-3.6.0-py3-none-any.whl
  • Upload date:
  • Size: 75.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-httpx/0.27.2

File hashes

Hashes for nglui-3.6.0-py3-none-any.whl
Algorithm Hash digest
SHA256 f9c0142855346409e6b7cf668287c2c497c86440075651650d33dd4f748c3657
MD5 08bfd5f479ae589525db8732328053b3
BLAKE2b-256 8f2ac436e6cf84c05b90004f4f150813cb0fdc25b925025e6b4652c781e14505

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page