Classes and functions for NGS data illustration
Project description
Example: Legoplot in NGSfig
import warnings
from pkg_resources import get_distribution, resource_stream, Requirement
from ngsfig.graphics import trinucleotide
with resource_stream(Requirement.parse("ngsfig"), "data/trinucleotide_demo.txt") as input:
trinucleotide.demo(input)
Run this script or paste it into a Python console.
Download and Install
GitHub (beta) <https://github.com/xiaobeizhao/ngsfigpy>
PyPI <https://pypi.python.org/pypi/ngsfig>
Dependencies
nose <https://pypi.python.org/pypi/nose>
setuptools>=33.1.1 <https://pypi.python.org/pypi/setuptools/33.1.1>
numpy>=1.11.3 <https://pypi.python.org/pypi/numpy/1.11.3>
pandas>=0.19.2 <https://pypi.python.org/pypi/pandas/0.19.2>
tabulate>=0.7.5 <https://pypi.python.org/pypi/tabulate/0.7.5>
matplotlib>=2.0.0 <https://pypi.python.org/pypi/matplotlib/2.0.0>
xmisc (beta) <https://github.com/xiaobeizhao/xmiscpy>
xmisc <https://pypi.python.org/pypi/xmisc>
License
Code and documentation are available according to the GNU LGPL License.
Project details
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