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Classes and functions for NGS data illustration

Project description

Example: Legoplot in NGSfig

import warnings
from pkg_resources import get_distribution, resource_stream, Requirement
from ngsfig.graphics import trinucleotide

with resource_stream(Requirement.parse("ngsfig"), "data/trinucleotide_demo.txt") as input:
  trinucleotide.demo(input)

Run this script or paste it into a Python console.

NGSfig | Legoplot

Download and Install

  • GitHub (beta) <https://github.com/xiaobeizhao/ngsfigpy>
  • PyPI <https://pypi.python.org/pypi/ngsfig>

Dependencies

  • nose <https://pypi.python.org/pypi/nose>
  • setuptools>=33.1.1 <https://pypi.python.org/pypi/setuptools/33.1.1>
  • numpy>=1.11.3 <https://pypi.python.org/pypi/numpy/1.11.3>
  • pandas>=0.19.2 <https://pypi.python.org/pypi/pandas/0.19.2>
  • tabulate>=0.7.5 <https://pypi.python.org/pypi/tabulate/0.7.5>
  • matplotlib>=2.0.0 <https://pypi.python.org/pypi/matplotlib/2.0.0>
  • xmisc (beta) <https://github.com/xiaobeizhao/xmiscpy>
  • xmisc <https://pypi.python.org/pypi/xmisc>

License

Code and documentation are available according to the GNU LGPL License.

Project details


Release history Release notifications

This version

0.1.1

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