Python package for Next Generation Sequencing fragment manipulation
Next Generation Sequencing fragment manipulation
This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.
If you dont already have numpy and scipy installed, it is best to download
Anaconda, a python distribution that has them included.
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install NGSfragments
from NGSfragments import fragments import numpy as np # Create data frags = fragments("test_bam.bam", verbose=True)
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