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Python package for Next Generation Sequencing fragment manipulation

Project description

Next Generation Sequencing fragment manipulation

Build Status PyPI version

This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.


If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install NGSfragments


from NGSfragments import fragments
import numpy as np

# Create data
frags = fragments("test_bam.bam", verbose=True)

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ngsfragments-1.0.8.tar.gz (52.3 MB view hashes)

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