Python package for Next Generation Sequencing fragment manipulation
Project description
Next Generation Sequencing fragment manipulation
This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda
, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install NGSfragments
Usage
from NGSfragments import fragments
import numpy as np
# Create data
frags = fragments("test_bam.bam", verbose=True)
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
ngsfragments-2.0.5.tar.gz
(6.0 MB
view hashes)
Built Distribution
Close
Hashes for ngsfragments-2.0.5-cp310-cp310-macosx_13_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 31f35d300b190a97f36e4f997737bb431845a79b5e98c309fd6ae1b615be20d5 |
|
MD5 | ac0cadbd5ad133b523ba47f17962e9bd |
|
BLAKE2b-256 | aca7402e3f2d88227ecdfeea9daa93151bacdd12c7f0f47506030a03ac5f2986 |