Python package for Next Generation Sequencing fragment manipulation
Project description
Next Generation Sequencing fragment manipulation
This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda
, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install NGSfragments
Usage
from NGSfragments import fragments
import numpy as np
# Create data
frags = fragments("test_bam.bam", verbose=True)
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
ngsfragments-2.1.6.tar.gz
(6.6 MB
view hashes)
Built Distribution
Close
Hashes for ngsfragments-2.1.6-cp311-cp311-macosx_14_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | e43ef5212fa0dbba587ee16465968e8055779b100774e8b298c5d2fec20fd523 |
|
MD5 | 6286b370bcc5313d2edcb2eda6fc0fe3 |
|
BLAKE2b-256 | df6412e7777e16df34d48c9a60bb854c3f6b2a175fded4973c62aec42b165803 |