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Export of FSL statistical results using NIDM as specified at http://nidm.nidash.org/specs/nidm-results.html.

Project description

NIDM-Results for FSL
====================

Export mass-univariate neuroimaging results computed in FSL (using FEAT)
as NIDM-Results packs.

A *NIDM-Results pack* is a compressed file containing a NIDM-Results
serialization and some or all of the referenced image data files in
compliance with `NIDM-Results specification`_.

Usage
'''''

::

usage: nidmfsl [-h] [-g [GROUP_NAMES [GROUP_NAMES ...]]] [-o OUTPUT_NAME] [-d]
[-v [NIDM_VERSION]] [--version]
feat_dir [numsubjects [numsubjects ...]]

NIDM-Results exporter for FSL Feat.

positional arguments:
feat_dir Path to feat directory.
numsubjects Number of subjects per group.

optional arguments:
-h, --help show this help message and exit
-g [GROUP_NAMES [GROUP_NAMES ...]], --group_names [GROUP_NAMES [GROUP_NAMES ...]]
Label for each group.
-o OUTPUT_NAME, --output_name OUTPUT_NAME
Name of the output. A ".nidm.zip" or ".nidm" (when -d
is used) suffix will be appended.
-d, --directory-output
Produces a .nidm directory rather than a .nidm.zip
file.
-v [NIDM_VERSION], --nidm_version [NIDM_VERSION]
NIDM-Results version to use (default: latest).
--version show program's version number and exit

Requirements
''''''''''''

- `nidmresults`_

Installation
''''''''''''

::

pip install nidmfsl

.. _NIDM-Results specification: http://nidm.nidash.org/specs/nidm-results.html
.. _nidmresults: http://pypi.python.org/pypi/nidmresults

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