command line or server tool to view or compare nidm results.
Project description
# nidm-viewer
NIDM Results Viewer
- parses peak coordinates and associated brain maps
- interactive coordinate browsing
- save image to file (export)
- produces html code for embedding, or local viewer
- uses [font brain](http://vsoch.github.io/font-brain) for nidm and brain imaging icons
###### Documentation
Complete documentation [is available](http://nidmviewer.readthedocs.org/en/latest/)
###### Installation
To install
pip install git+git://github.com/vsoch/nidmviewer.git
#### Running Examples
###### Python (server)
see [an example](examples/generate_viewer.py)
##### Command Line
###### Usage
When installing with setup.py, an executable, `nidmviewer` is installed in your bin to view nidm files on the fly:
nidmviewer fsl/nidm.ttl
![img/example.png](img/example.png)
You can see the basic usage by typing the command:
nidmviewer
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
nidmviewer: error: too few arguments
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
command line or server tool to view or compare nidm results.
positional arguments:
ttl List of comma separated ttl files to parse.
base base image (standard brain map) to use for the viewer
background.
optional arguments:
-h, --help show this help message and exit
--columns_to_remove COLUMNS_TO_REMOVE
Comma separated list of columns to remove from viewer.
Please submit bugs, comments, and feedback as PRs. This application has not been rigorously tested. Thanks!
###### Many Thanks
[Papaya Viewer](https://github.com/rii-mango/Papaya), we salute you!
#### Coming Soon
- plotting
- please [submit feedback and requests](https://github.com/vsoch/nidmviewer)
[demo](http://vsoch.github.io/nidmviewer)
NIDM Results Viewer
- parses peak coordinates and associated brain maps
- interactive coordinate browsing
- save image to file (export)
- produces html code for embedding, or local viewer
- uses [font brain](http://vsoch.github.io/font-brain) for nidm and brain imaging icons
###### Documentation
Complete documentation [is available](http://nidmviewer.readthedocs.org/en/latest/)
###### Installation
To install
pip install git+git://github.com/vsoch/nidmviewer.git
#### Running Examples
###### Python (server)
see [an example](examples/generate_viewer.py)
##### Command Line
###### Usage
When installing with setup.py, an executable, `nidmviewer` is installed in your bin to view nidm files on the fly:
nidmviewer fsl/nidm.ttl
![img/example.png](img/example.png)
You can see the basic usage by typing the command:
nidmviewer
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
nidmviewer: error: too few arguments
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
command line or server tool to view or compare nidm results.
positional arguments:
ttl List of comma separated ttl files to parse.
base base image (standard brain map) to use for the viewer
background.
optional arguments:
-h, --help show this help message and exit
--columns_to_remove COLUMNS_TO_REMOVE
Comma separated list of columns to remove from viewer.
Please submit bugs, comments, and feedback as PRs. This application has not been rigorously tested. Thanks!
###### Many Thanks
[Papaya Viewer](https://github.com/rii-mango/Papaya), we salute you!
#### Coming Soon
- plotting
- please [submit feedback and requests](https://github.com/vsoch/nidmviewer)
[demo](http://vsoch.github.io/nidmviewer)
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