nidmviewer 0.1.2

command line or server tool to view or compare nidm results.

# nidm-viewer

NIDM Results Viewer

- parses peak coordinates and associated brain maps
- interactive coordinate browsing
- save image to file (export)
- produces html code for embedding, or local viewer
- uses [font brain](http://vsoch.github.io/font-brain) for nidm and brain imaging icons


###### Documentation
Complete documentation [is available](http://nidmviewer.readthedocs.org/en/latest/)

###### Installation

To install

pip install git+git://github.com/vsoch/nidmviewer.git


#### Running Examples

###### Python (server)

see [an example](examples/generate_viewer.py)


##### Command Line

###### Usage

When installing with setup.py, an executable, `nidmviewer` is installed in your bin to view nidm files on the fly:

nidmviewer fsl/nidm.ttl




You can see the basic usage by typing the command:


nidmviewer

usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
nidmviewer: error: too few arguments
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base

command line or server tool to view or compare nidm results.

positional arguments:

ttl List of comma separated ttl files to parse.
base base image (standard brain map) to use for the viewer
background.

optional arguments:

-h, --help show this help message and exit
--columns_to_remove COLUMNS_TO_REMOVE

Comma separated list of columns to remove from viewer.

Please submit bugs, comments, and feedback as PRs. This application has not been rigorously tested. Thanks!


###### Many Thanks
[Papaya Viewer](https://github.com/rii-mango/Papaya), we salute you!


#### Coming Soon

- plotting
- please [submit feedback and requests](https://github.com/vsoch/nidmviewer)

[demo](http://vsoch.github.io/nidmviewer)