Numerical IMage Analyses.
Project description
A library and a cli to help image analyses based on scipy.ndimage and scikit-image.
Features
- easy dark and flat correction
- automatic cell segmentation
- easy ratio analyses
Installation
:
pyenv virtualenv 3.10.4 nima-0.5.4
pyenv activate
poetry install
pip install .
Optionally:
python -m ipykernel install --user --name="nima0.3.1"
Usage
To use nima in a project:
from nima import nima
See documentation for the nima command line.
Description
A longer description of your project goes here...
Note
pyenv activate nima-... poetry install pre-commit install before next first commit: pre-commit run --all-files
pyenv activate nima-0.2 poetry install pip install .
so it is not installed in development mode and this version will persist to updates.
todo
- restore sane complexity value (< 21).
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