nima 0.8.0

Numerical IMage Analyses.

NImA

A library and a cli to help image analyses based on scipy.ndimage and scikit-image.

• Version: “0.8.0”

Features

• easy dark and flat correction
• automatic cell segmentation
• easy ratio analyses

Installation

You can get the library directly from PyPI using pip:

pip install nima

Alternatively, you can use pipx to install it in an isolated environment:

pipx install nima

To enable auto completion for the nima command, follow these steps:

1. Generate the completion script by running the following command:

   _CLOP_COMPLETE=bash_source nima > ~/.local/bin/nima-complete.bash
   

2. Source the generated completion script to enable auto completion:

   source ~/.local/bin/nima-complete.bash
   

Usage

To use nima in a project:

from nima import nima

See documentation for the nima command line.

Description

A longer description of your project goes here...

Note

pyenv activate nima-...
poetry install pre-commit

install before next first commit: pre-commit run --all-files

nox --session=pre-commit -- install
and activate poetry


pyenv activate nima-0.2
poetry install
pip install .

so it is not installed in development mode and this version will persist to updates.

todo

• restore sane complexity value (< 21).