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nmodl_preprocessor

This program optimizes NMODL files for the NEURON simulator.
It performs the following optimizations to ".mod" files:

  • Hardcode the parameters
  • Hardcode the temperature
  • Hardcode any assigned variables with constant values
  • Inline all functions and procedures
  • Convert assigned variables into local variables

These optimizations can improve run-time performance and memory usage by as much as 15%.

Installation

Prerequisites

pip install nmodl_preprocessor

Usage

$ nmodl_preprocessor [-h] [--celsius CELSIUS] input_path output_path

positional arguments:
  input_path         input filename or directory of nmodl files
  output_path        output filename or directory for nmodl files

options:
  -h, --help         show this help message and exit
  --celsius CELSIUS  temperature of the simulation

Tips

  • This program will not optimize any RANGE or GLOBAL symbols.

    • Remove them unless you actually need to inspect or modify their value at run-time.
    • Add parameters to a GLOBAL statement to preserve them.
  • Remove unnecessary VERBATIM statements.

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