nmodl_preprocessor

This program optimizes NMODL files for the NEURON simulator.
It performs the following optimizations to ".mod" files:

Hardcode the parameters
Hardcode the temperature
Hardcode any assigned variables with constant values
Inline all functions and procedures
Convert assigned variables into local variables

These optimizations can improve run-time performance and memory usage by as much as 15%.

Installation

Prerequisites

Python and pip
The NMODL Framework

pip install nmodl_preprocessor

Usage

$ nmodl_preprocessor [-h] [--celsius CELSIUS] input_path output_path

positional arguments:
  input_path         input filename or directory of nmodl files
  output_path        output filename or directory for nmodl files

options:
  -h, --help         show this help message and exit
  --celsius CELSIUS  temperature of the simulation

Tips

This program will not optimize any RANGE or GLOBAL symbols.
- Remove them unless you actually need to inspect or modify their value at run-time.
- Add parameters to a GLOBAL statement to preserve them.
Remove unnecessary VERBATIM statements.

Development Status
- 5 - Production/Stable
Environment
- Console
Intended Audience
- Science/Research
License
- OSI Approved :: MIT License
Natural Language
- English
Operating System
- OS Independent
Programming Language
- Python :: 3
Topic
- Scientific/Engineering

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

nmodl_preprocessor-1.0.5.tar.gz (45.4 kB view details)

Uploaded May 1, 2023 Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

The dropdown lists show the available interpreters, ABIs, and platforms. Enable javascript to be able to filter the list of wheel files.

nmodl_preprocessor-1.0.5-py3-none-any.whl (13.8 kB view details)

Uploaded May 1, 2023 Python 3

File details

Details for the file nmodl_preprocessor-1.0.5.tar.gz.

File metadata

Download URL: nmodl_preprocessor-1.0.5.tar.gz
Upload date: May 1, 2023
Size: 45.4 kB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/4.0.2 CPython/3.10.6

File hashes

Hashes for nmodl_preprocessor-1.0.5.tar.gz
Algorithm	Hash digest
SHA256	`482883f05e2da9725d854d1d3d4db99efb9b2ee36286b45b22307647d45b52f0`
MD5	`3f34ffcd220a62f734f1c1ffe160f6ec`
BLAKE2b-256	`dc31fe18b268f49ffc73918a6f2477f40d0fb4c6bbaec3ed20b66dd8f3c89775`

See more details on using hashes here.

File details

Details for the file nmodl_preprocessor-1.0.5-py3-none-any.whl.

File metadata

Download URL: nmodl_preprocessor-1.0.5-py3-none-any.whl
Upload date: May 1, 2023
Size: 13.8 kB
Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: twine/4.0.2 CPython/3.10.6

File hashes

Hashes for nmodl_preprocessor-1.0.5-py3-none-any.whl
Algorithm	Hash digest
SHA256	`fe2daa78a8b8ab7214640161946d5224e47a28960de402ef058a73eb1a72e974`
MD5	`16460b019370609471c5b328c12b3a42`
BLAKE2b-256	`2b2c27c767520745b9a07522bfdf822eadf0ef8f1fb73f9fd17cd27040422a8c`