nnfasta 0.1.1

Neural Net efficient Fasta

nnfasta

Neural Net efficient fasta Dataset for Training.

Should be efficient across process boundaries etc. So useful as input to torch/tensorflow dataloaders etc.

Presents a list of fasta files as a simple abc.Sequence so you can inquire about len(dataset) and retrieve Records with dataset[i]

Usage

Install:

pip install nnfasta

from nnfasta import nnfastas 


dataset = nnfastas(['athaliana.fasta','triticum.fasta','zmays.fasta'])`

print(len(datset))

rec = dataset[20]
print('sequence', rec.seq)