noah-cli 0.1.1

a project management tool for reproducible, shareable, and streamlined bioinformatics analysis

Noah

Noah is a project management tool specifically designed for bioinformatics projects. It enables reproducible analysis of large datasets, making it effortless to share and collaborate with others.

Features

• A human-readable configuration file
• Automated retrieval of data from public databases
• Managing data, containers, and workflows, all in one place

Installation

The easiest way to install Noah is to use pip:

pip install noah-cli

Quickstart

To get started with Noah, you can use the noah init command to create a new project:

noah init my_project # This will by default create a Git repository in my_project
cd my_project

To add a new dataset to your project, you can use the noah add command:

noah add SRP123456 # ENCSR123ABC, GSE123456, etc. are also supported

You can also add privately hosted datasets:

noah add me@some_host:path/to/my_dataset ftp://ftp.example.com/another_dataset # You can add multiple datasets at once

To share your project with others, simply push it to GitHub, and they can retrieve the data with the noah install command:

git clone https://github.com/me/my_project.git
cd my_project
noah install

For more information, please refer to examples.

License

Noah is licensed under the MIT license. See LICENSE for details.