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SPT trajectory analysis

Project description

Documentation Status

noctiluca

A python framework for trajectory analysis in single particle tracking (SPT) experiments. For an Introduction, some worked examples, and the full API reference head over to our documentation at ReadTheDocs.

To install noctiluca you can use the latest stable version from PyPI

$ pip install --upgrade noctiluca

or the very latest updates right from GitHub:

$ pip install git+https://github.com/OpenTrajectoryAnalysis/noctiluca

Developers

Note the Makefile, which can be used to build the documentation (using Sphinx); run unit tests and check code coverage; and build an updated package for release with GNU make.

When editing the example notebooks, remember to remove output and empty cells before committing to the git repo. nbstripout allows to do this automatically upon commit.

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