De novo spatial reconstruction of single-cell gene expression.
Project description
novoSpaRc - de novo Spatial Reconstruction of Single-Cell Gene Expression
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
novoSpaRc accompanies the following publications:
and
novoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transportN Moriel*, E Senel*, N Friedman, N Rajewsky, N Karaiskos†, M Nitzan†
Read the documentation and the tutorial for more information.
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