novosparc 0.3.3

De novo spatial reconstruction of single-cell gene expression.

|PyPI| |Docs|

.. |PyPI| image:: https://img.shields.io/pypi/v/novosparc.svg :target: https://pypi.org/project/novosparc/ .. |Docs| image:: https://readthedocs.org/projects/novosparc-nukappa/badge/?version=latest :target: https://novosparc-nukappa.readthedocs.io/en/latest/

novoSpaRc - de novo Spatial Reconstruction of Single-Cell Gene Expression

.. image:: https://raw.githubusercontent.com/nukappa/nukappa.github.io/master/images/novosparc.png :width: 90px :align: left

novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.

novoSpaRc accompanies the following publication:

| *Charting a tissue from single-cell transcriptomes*
| M. Nitzan, N. Karaiskos, N. Friedman, N. Rajewsky
| `bioRxiv 456350 <https://www.biorxiv.org/content/biorxiv/early/2018/10/30/456350.full.pdf>`_

Read the documentation <https://novosparc-nukappa.readthedocs.io/en/latest/>_ for more information.