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Config fetching from file or Zookeeper - with local backup - repackaging code from AIBS mpeconfig.

Project description

For use on internal Allen Institute network

  • fetch configs from ZooKeeper nodes or .yaml/.json files:
zk_config: dict[str, str | int] = np_config.from_zk('/rigs/NP.1')

file_config: dict[str, Any] = np_config.from_file('local_config.yaml')
  • if running on a machine attached to a Mindscope Neuropixels rig (NP.0, ..., NP.3), get rig-specific config info with:
rig = np_config.Rig()

name: str = rig.id                      # "NP.1"
index: int = rig.idx                    # 1

acquisition_pc_hostname: str = rig.acq      # "W10DT713843"
config: dict[str, str | int] = rig.config   # specific to NP.1
paths: dict[str, pathlib.Path] = rig.paths  # using values from rig.config
  • if not running on a rig-attached machine, get the config for a particular rig by supplying rig-index as an int to Rig:
np1 = np_config.Rig(1)

np1_mvr_data_root: pathlib.Path = np.paths['MVR']
  • the Mindscope ZooKeeper server is at eng-mindscope:2181

  • configs can be added via ZooNavigator webview: http://eng-mindscope:8081

  • or more conveniently, via an extension for VSCode such as gaoliang.visual-zookeeper

  • configs are cached locally: if the ZooKeeper server is unavailable, the local copy will be used

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