Ecephys and behavior workflows for the Mindscope Neuropixels team.

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Project description

np_workflows

This package contains all the Python code required to run Mindscope Neuropixels experiments.

Experiment workflows and related tasks are coordinated by Jupyter notebooks maintained here: https://github.com/AllenInstitute/np_notebooks

Running the notebooks requires a Python environment with:

  • Python >= 3.11
  • np_workflows
  • Jupyter / JupyterLab
git clone https://github.com/AllenInstitute/np_notebooks
conda create -n workflows python>=3.11
pip install np_workflows
pip install jupyterlab

Keep the np_workflows package up-to-date by running pip install np_workflows -U before each use

To develop this package git clone then poetry install

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