Ecephys and behavior workflows for the Mindscope Neuropixels team.
Project description
np_workflows
This package contains all the Python code required to run Mindscope Neuropixels experiments.
Experiment workflows and related tasks are coordinated by Jupyter notebooks maintained here: https://github.com/AllenInstitute/np_notebooks
Running the notebooks requires a Python environment with:
- Python >= 3.11
- np_workflows
- Jupyter / JupyterLab
git clone https://github.com/AllenInstitute/np_notebooks
conda create -n workflows python=3.11
pip install np_workflows
pip install jupyterlab
Keep the np_workflows
package up-to-date by running pip install np_workflows -U
before each use
To develop this package git clone
then poetry install
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