Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.
Project description
npc_lims
neuropixels cloud lab information management system Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.
quickstart
pip install npc_lims
Get some minimal info on all the tracked sessions available to work with:
>>> from npc_lims import get_tracked_sessions;
# each record in the sequence has info about one session:
>>> tracked_sessions = get_tracked_sessions()
>>> tracked_sessions[0] # doctest: +SKIP
SessionInfo(id='626791_2022-08-15', subject=626791, date='2022-08-15', idx=0, project='DRPilotSession', is_ephys=True, is_sync=True, allen_path=PosixUPath('//allen/programs/mindscope/workgroups/dynamicrouting/PilotEphys/Task 2 pilot/DRpilot_626791_20220815'))
>>> tracked_sessions[0].is_ephys
True
>>> all(s.date.year >= 2022 for s in tracked_sessions)
True
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