npc_sessions 0.0.26

Tools and interfaces for working with behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

npc_sessions

neuropixels cloud sessions

Tools for accessing data and metadata for behavior and epyhys sessions from the Mindscope Neuropixels team - in the cloud.

quickstart

Make a conda environment with python>=3.9 and simply pip install the npc_sessions package:

conda create -n npc_sessions python>=3.9
conda activate npc_sessions
pip install npc_sessions

Get some minimal info on all the tracked sessions available to work with:

>>> from npc_sessions import tracked as tracked_sessions;

# each record in the sequence has info about one session:
>>> tracked_sessions[0]._fields
('session', 'subject', 'date', 'idx', 'project', 'is_ephys', 'is_sync', 'allen_path')
>>> tracked_sessions[0].is_ephys
True
>>> all(s.date.year >= 2022 for s in tracked_sessions)
True

to develop with conda

To install with the intention of contributing to this package:

1. create a conda environment:

conda create -n npc_sessions python>=3.9
conda activate npc_sessions

2. clone npc_sessions from github:

git clone [e-mail]:AllenInstitute/npc_sessions.git

3. pip install all dependencies:

cd npc_sessions
pip install -e .