Tools and interfaces for working with behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
Project description
npc_sessions
neuropixels cloud sessions
Tools for accessing data and metadata for behavior and epyhys sessions from the Mindscope Neuropixels team - in the cloud.
quickstart
Make a conda environment with python>=3.9 and simply pip install the npc_sessions package:
conda create -n npc_sessions python>=3.9
conda activate npc_sessions
pip install npc_sessions
Get some minimal info on all the tracked sessions available to work with:
>>> from npc_sessions import tracked as tracked_sessions;
# each record in the sequence has info about one session:
>>> tracked_sessions[0]._fields
('session', 'subject', 'date', 'idx', 'project', 'is_ephys', 'is_sync', 'allen_path')
>>> tracked_sessions[0].is_ephys
True
>>> all(s.date.year >= 2022 for s in tracked_sessions)
True
to develop with conda
To install with the intention of contributing to this package:
- create a conda environment:
conda create -n npc_sessions python>=3.9
conda activate npc_sessions
- clone npc_sessions from github:
git clone git@github.com:AllenInstitute/npc_sessions.git
- pip install all dependencies:
cd npc_sessions
pip install -e .
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