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Some useful extensions for NumPy

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npx

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NumPy and SciPy are large libraries used everywhere in scientific computing. That's why breaking backwards-compatibility comes as a significant cost and is almost always avoided, even if the API of some methods is arguably lacking. This package provides drop-in wrappers "fixing" those.

If you have a fix for a NumPy method that can't go upstream for some reason, feel free to PR here.

  • npx.dot(a, b)
    

    Forms the dot product between the last axis of a and the first axis of b.

    (Not the second-last axis of b as numpy.dot(a, b).)

  • npx.solve(A, b)
    

    Solves a linear equation system with a matrix of shape (n, n) and an array of shape (n, ...). The output has the same shape as the second argument.

  • npx.sum_at(a, idx, minlength: int = 0)
    npx.add_at(out, idx, a)
    

    Returns an array with entries of a summed up at indices idx with a minumum length of minlength. idx can have any shape as long as it's matching a. The output shape is (minlength,...).

    The numpy equivalent numpy.add.at is much slower:

    memory usage

    (See also this numpy bug.)

  • npx.unique_rows(a, return_inverse=False, return_counts=False)
    

    Returns the unique rows of the integer array a. The numpy alternative np.unique(a, axis=0) is slow.

  • sol, info = npx.cg(A, b, tol=1.0e-10)
    sol, info = npx.minres(A, b, tol=1.0e-10)
    sol, info = npx.gmres(A, b, tol=1.0e-10)
    

    sol is the solution of the linear system A @ x = b (or None if no convergence), and info contains some useful data, e.g., info.resnorms. The methods are wrappers around SciPy's iterative solvers.

License

npx is published under the MIT license.

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