ntai
ntai stands for nucleotide (nt) artificial intelligence (A.I.). ntai is a small python library for using fasta sequences with artificial intelligence (A.I.).
Currently there are two main modules that will be of use
Codex, andbedtools
Read the documentation: https://sumneuron.gitlab.io/ntai/
Codex
Codex is a class for hot-encoding fasta sequences into channels and back.
Codex is useful because a character in a fasta sequences can encode multiple
nucleotides or even random repeats.
bedtools
bedtools is a function exposing the bedtools library to python. This allows
users to extract fasta sequences from a reference genome with writing to /
reading from files.
fetch
fetch is a module for fetching the necessary data for using ntai.
Currently fetch.utils supports the requests for:
-
fetch_hg38acquires the fasta for hg38 gzipped -
fetch_exonsacquires Gencode Comprehensive v28 exons in bed format -
fetch_intronsacquires Gencode Comprehensive v28 introns in bed format -
fetch_hg38_chrom_sizesacquires the chromosome sizes for hg38 in tsv format -
decompresswill decompress a.gzfile
The function fetch.fetch_files will get all of these files and decompress hg38 in a specified directory.
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Release files for ntai 1.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ntai-1.0.0.tar.gz | 14.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ntai-1.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 32.6 kB
Release files / ntai-1.0.0.tar.gz
| Download URL | ntai-1.0.0.tar.gz |
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| Size | 14.3 kB |
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Release files / ntai-1.0.0-py3-none-any.whl
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| Tags | Python 3 |
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