ntai stands for nucleotide (nt) artificial intelligence (A.I.). ntai is a small python library for using fasta sequences with artificial intelligence (A.I.).
Currently there are two main modules that will be of use
Codex is a class for hot-encoding fasta sequences into channels and back.
Codex is useful because a character in a fasta sequences can encode multiple
nucleotides or even random repeats.
bedtools is a function exposing the
bedtools library to python. This allows
users to extract fasta sequences from a reference genome with writing to /
reading from files.
fetch is a module for fetching the necessary data for using
fetch.utils supports the requests for:
fetch_hg38acquires the fasta for hg38 gzipped
fetch_exonsacquires Gencode Comprehensive v28 exons in bed format
fetch_intronsacquires Gencode Comprehensive v28 introns in bed format
fetch_hg38_chrom_sizesacquires the chromosome sizes for hg38 in tsv format
decompresswill decompress a
fetch.fetch_files will get all of these files and decompress hg38 in a specified directory.
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