nucleofind

NucleoFind: A Deep-Learning Network for Interpreting Nucleic Acid Electron Density

Project description

Nucleic acid electron density interpretation remains a difficult problem for computer programs to deal with. Programs tend to rely on exhaustive searches to recognise characteristic features. NucleoFind is a deep-learning-based approach to interpreting and segmenting electron density. Using a crystallographic map, the positions of the phosphate group, sugar ring and nitrogenous base group are able to be predicted with high accuracy.

Documentation

Link to Documentation

Project details

Release history Release notifications | RSS feed

0.7.1

Oct 10, 2024

0.7.0

Sep 14, 2024

0.6.2

Jun 26, 2024

0.6.1

May 24, 2024

0.6.0

May 24, 2024

This version

0.5.6

Apr 12, 2024

0.5.5

Apr 5, 2024

0.5.4

Apr 3, 2024

0.5.2

Mar 28, 2024

0.5

Mar 23, 2024

0.4.8

Feb 24, 2024

0.4.7

Jan 11, 2024

0.4.6

Dec 28, 2023

0.4.3

Dec 23, 2023

0.4.0

Dec 22, 2023

0.3.1

Nov 30, 2023

0.2.5

Oct 18, 2023

0.2.4

Oct 18, 2023

0.2.3

Oct 18, 2023

0.2.2

Oct 18, 2023

0.2.1

Oct 18, 2023

0.2

Oct 18, 2023

0.0.1

Nov 30, 2023

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distributions

No source distribution files available for this release.See tutorial on generating distribution archives.

Built Distributions

nucleofind-0.5.6-cp312-abi3-musllinux_1_1_x86_64.whl (6.9 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.12+ musllinux: musl 1.1+ x86-64

nucleofind-0.5.6-cp312-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.5 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.12+ manylinux: glibc 2.17+ x86-64

nucleofind-0.5.6-cp312-abi3-macosx_11_0_arm64.whl (5.8 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.12+ macOS 11.0+ ARM64

nucleofind-0.5.6-cp312-abi3-macosx_10_14_x86_64.whl (6.1 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.12+ macOS 10.14+ x86-64

nucleofind-0.5.6-cp311-cp311-musllinux_1_1_x86_64.whl (6.9 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.11 musllinux: musl 1.1+ x86-64

nucleofind-0.5.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.5 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.11 manylinux: glibc 2.17+ x86-64

nucleofind-0.5.6-cp311-cp311-macosx_11_0_arm64.whl (5.8 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.11 macOS 11.0+ ARM64

nucleofind-0.5.6-cp311-cp311-macosx_10_14_x86_64.whl (6.1 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.11 macOS 10.14+ x86-64

nucleofind-0.5.6-cp310-cp310-musllinux_1_1_x86_64.whl (6.9 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.10 musllinux: musl 1.1+ x86-64

nucleofind-0.5.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.5 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.10 manylinux: glibc 2.17+ x86-64

nucleofind-0.5.6-cp310-cp310-macosx_11_0_arm64.whl (5.8 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.10 macOS 11.0+ ARM64

nucleofind-0.5.6-cp310-cp310-macosx_10_14_x86_64.whl (6.1 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.10 macOS 10.14+ x86-64

nucleofind-0.5.6-cp39-cp39-musllinux_1_1_x86_64.whl (6.9 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.9 musllinux: musl 1.1+ x86-64

nucleofind-0.5.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.5 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.9 manylinux: glibc 2.17+ x86-64

nucleofind-0.5.6-cp39-cp39-macosx_11_0_arm64.whl (5.8 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.9 macOS 11.0+ ARM64

nucleofind-0.5.6-cp39-cp39-macosx_10_14_x86_64.whl (6.1 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.9 macOS 10.14+ x86-64

nucleofind-0.5.6-cp38-cp38-musllinux_1_1_x86_64.whl (6.9 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.8 musllinux: musl 1.1+ x86-64

nucleofind-0.5.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.5 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.8 manylinux: glibc 2.17+ x86-64

nucleofind-0.5.6-cp38-cp38-macosx_11_0_arm64.whl (5.8 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.8 macOS 11.0+ ARM64

nucleofind-0.5.6-cp38-cp38-macosx_10_14_x86_64.whl (6.1 MB view hashes)

Uploaded Apr 12, 2024 CPython 3.8 macOS 10.14+ x86-64

Hashes for nucleofind-0.5.6-cp312-abi3-musllinux_1_1_x86_64.whl

Hashes for nucleofind-0.5.6-cp312-abi3-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`2977694c36f82e017077dbc855f6771f29f0342d9e5dcede662558276b3dc28e`
MD5	`8d04975c0eaf5497d5129bfd75ea3694`
BLAKE2b-256	`42eb0c4dd1b9921ac9c446acc993919ca246b625bac15bbbef6897b3a3eaa2c5`

Hashes for nucleofind-0.5.6-cp312-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for nucleofind-0.5.6-cp312-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`a4194cae5f446f76d8bf1d05e813c2d6e45420d4e23cfa9d84b6d3c7666147f1`
MD5	`db88ccb716a235d923f510b93074cc89`
BLAKE2b-256	`7458ba5ce7bd567a4e1af2eb27e2b39bfe9168a1a4e317bba0d3fa3a466322bd`

Hashes for nucleofind-0.5.6-cp312-abi3-macosx_11_0_arm64.whl

Hashes for nucleofind-0.5.6-cp312-abi3-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`5ead1c6257576cc8347024eaeb5282526e793c9e047082d363f67c7c80e00efb`
MD5	`91b020b6f13ac1f55bfb950f88483758`
BLAKE2b-256	`4d93352f1e6890903c0e238654ce1170713b50db1395b6d9c59c8a9e10ddbb25`

Hashes for nucleofind-0.5.6-cp312-abi3-macosx_10_14_x86_64.whl

Hashes for nucleofind-0.5.6-cp312-abi3-macosx_10_14_x86_64.whl
Algorithm	Hash digest
SHA256	`886831e6a036e3d8369982c87318bc517aaa8525dd6b05b6cded53ea566782da`
MD5	`2a6ed97dddc11ba0c6fc8155c6fbf52d`
BLAKE2b-256	`93dbc3ace94b9d61bc70b9b1c37ee5222416478c7aad4fb300e348b59b668fe0`

Hashes for nucleofind-0.5.6-cp311-cp311-musllinux_1_1_x86_64.whl

Hashes for nucleofind-0.5.6-cp311-cp311-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`f65e96006422d80a055cfbe6ad1722a80abefa478f3de8fc0884cd7be8ca69ab`
MD5	`466ced777489dce2b678d665c578109c`
BLAKE2b-256	`034ba8c196e849207621d7b98cb377a4ae3328056ec0bb2f174a21735ee61de3`

Hashes for nucleofind-0.5.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for nucleofind-0.5.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`6a2fa2ccc0b687b942bd2b496edefcf88594e1a3792a720d25f267075f905edb`
MD5	`d68696e6ab08006643ad2049cb123cf5`
BLAKE2b-256	`a1e859970059c2ea43db4bce185f74ba09cd8feabf9033c20359b8c7a36a9e61`

Hashes for nucleofind-0.5.6-cp311-cp311-macosx_11_0_arm64.whl

Hashes for nucleofind-0.5.6-cp311-cp311-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`f9754c27fa2d62b7115bc051fde9c672571562a8ce5cb8c576eb7b63d7640bf1`
MD5	`4b642c5542f10a610a537128af6f9e64`
BLAKE2b-256	`b314a6edf96b9fa213e472ac554608228a673df0b648623cde5b249dcb9bddef`

Hashes for nucleofind-0.5.6-cp311-cp311-macosx_10_14_x86_64.whl

Hashes for nucleofind-0.5.6-cp311-cp311-macosx_10_14_x86_64.whl
Algorithm	Hash digest
SHA256	`a692e320a690af2e16fa1fab6fd95e7d10bdbf1cbe32d2a1963f242d651c4e5b`
MD5	`c6faef29d0d427686b0d48e2f512bfa8`
BLAKE2b-256	`f0d883947e02fe8252168515c22a8897c2b2a41d1103a9b4f3899691f75c99b6`

Hashes for nucleofind-0.5.6-cp310-cp310-musllinux_1_1_x86_64.whl

Hashes for nucleofind-0.5.6-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`d56e6fb02c29383c2c634d0596e7510868fe60bfb203e568463429ba7d196fb6`
MD5	`2cff564ec31acf9ba926675754b6784c`
BLAKE2b-256	`d4b6cb76d5f60583a2eae668faffee39d08bf7a34c7906fc14eb9ad3460e4712`

Hashes for nucleofind-0.5.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for nucleofind-0.5.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`4d5a8ecc54aace3650027e46d1375e97d9fd94d45c80ea330f8957655cadb137`
MD5	`b244b6a9f38d86ea968bab26aa666d8b`
BLAKE2b-256	`7aaf1263e26e40a8f34c9219f53fbda20ee30ac36884c3155beb4c234200abe2`

Hashes for nucleofind-0.5.6-cp310-cp310-macosx_11_0_arm64.whl

Hashes for nucleofind-0.5.6-cp310-cp310-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`faea1371d2bc685fe24f74aee252b8311a5f1d4b4e0074b715c2023d962db921`
MD5	`f7219a82170c007ffdbbac97099095fd`
BLAKE2b-256	`6b526fbd793ebd6326e1aa2ef213cde5a8fdb9e80b96092c28f842c3fbad1f34`

Hashes for nucleofind-0.5.6-cp310-cp310-macosx_10_14_x86_64.whl

Hashes for nucleofind-0.5.6-cp310-cp310-macosx_10_14_x86_64.whl
Algorithm	Hash digest
SHA256	`c8e084f4c4a0bc83aca02d3a9e0402f854cc13716e4e48151ed844958b7c4da1`
MD5	`2ea1bdfde9a504e7f897b31ac00f6f51`
BLAKE2b-256	`5d248120b7e27b450fcf83d3b44b2556bf833cad71a0e2698f8bb1d6d92e6470`

Hashes for nucleofind-0.5.6-cp39-cp39-musllinux_1_1_x86_64.whl

Hashes for nucleofind-0.5.6-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`3604a8f5d25a3f2b45bf51a6021c19c3b6fab1340ddafbba16cfbd4831384023`
MD5	`6ddcd6e619ec6010040ba6512d8bfcc8`
BLAKE2b-256	`890a1cc3bcb08274a7c2e983c811c6fcfa0003ab7707d5252f15c6cf16dc2522`

Hashes for nucleofind-0.5.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for nucleofind-0.5.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`2578fcbf35b9e4032f19c9358150506c6f7720c2d2787eead90fb4c3c2a2e022`
MD5	`0a24914657b8a34ad530e4e85c839f33`
BLAKE2b-256	`e3cd2f75d9907b4b2190267110aec45844d1de1383ecaf90040dca0c0df039eb`

Hashes for nucleofind-0.5.6-cp39-cp39-macosx_11_0_arm64.whl

Hashes for nucleofind-0.5.6-cp39-cp39-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`074a284268938adb1a5592fd8cee41dc1291679b1ef1223dd3ddb9bbb65c09dc`
MD5	`7b2a5acc4319d80a76571ae2b1dac3dd`
BLAKE2b-256	`f8e7bc5702dd9d3d38973097e39676a5bf2cf5b747fedf1bfeec5f59405ef43a`

Hashes for nucleofind-0.5.6-cp39-cp39-macosx_10_14_x86_64.whl

Hashes for nucleofind-0.5.6-cp39-cp39-macosx_10_14_x86_64.whl
Algorithm	Hash digest
SHA256	`901d8abb9f00177adddefeea5c08b6936420bb7e877fde8d3a59d2b4799e0236`
MD5	`20de42b3eb618b953d53996cc99e2588`
BLAKE2b-256	`19cf4e910b575c8c80decfa690cc585f21c9b5b3ab193ac4852ccaeeda470c3d`

Hashes for nucleofind-0.5.6-cp38-cp38-musllinux_1_1_x86_64.whl

Hashes for nucleofind-0.5.6-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm	Hash digest
SHA256	`fea2c1104e0ffe4024bc9c5b654048af72fb8c0a244804a25d4a22699ba47048`
MD5	`3e7e9bc1c76e7af331ac4b48e0067f3d`
BLAKE2b-256	`275ab93e19e097d6fce534e88c3e7518357d9b90258caa0fa8c8c08e8fba010e`

Hashes for nucleofind-0.5.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for nucleofind-0.5.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`c0e1167df9063d158b466aa735450cea76d3af1880185542def63a95ccebb965`
MD5	`c63d61bba4d7a590e1c40891b0289734`
BLAKE2b-256	`0b94b915b2e52ec15029948567eaa389d7fb04b7bbd77fc251fa625e57acbff5`

Hashes for nucleofind-0.5.6-cp38-cp38-macosx_11_0_arm64.whl

Hashes for nucleofind-0.5.6-cp38-cp38-macosx_11_0_arm64.whl
Algorithm	Hash digest
SHA256	`99a526405523eb9fa4f7bc1126a542062ff6eb4ac919eecc02043cb7833d6eab`
MD5	`03352fde5fe5642984a502d79f87b56e`
BLAKE2b-256	`57e942c9ca4ad39e75c94ec5948e9e0e80513bf460b4493b7eaee67498fad3ba`

Hashes for nucleofind-0.5.6-cp38-cp38-macosx_10_14_x86_64.whl

Hashes for nucleofind-0.5.6-cp38-cp38-macosx_10_14_x86_64.whl
Algorithm	Hash digest
SHA256	`44612123dcf00ee155a0304d6597ebb5ec0225b20b45f207e0f7f2ec57b54a1a`
MD5	`bb05a3f670561a31f03530c1ab67754b`
BLAKE2b-256	`84b3b05cfe6aa811fe602a0f015ee8e052e38353b77bac896e1c4f7fe2a566f6`