Description
Python-based tools and utilities for NUFEB simulations
Getting Started
Install via pip:
pip install nufeb-tools
Generate NUFEB simulations from the CLI:
nufeb-seed
Remove old runs:
nufeb-clean
Get data from a simulation for analysis
from nufeb_tools import utils
x = utils.get_data(test=True)Plot the overall growth
from nufeb_tools import plot
import matplotlib.pyplot as plt
f, ax = plt.subplots()
plot.overall_growth(x.biomass,ax=ax)
Plot colonies based on initial seed cells
from nufeb_tools import utils, plot
import matplotlib.pyplot as plt
x = utils.get_data(directory=r'E:\sucrose\runs\Run_50_50_1.00e+00_1_2022-01-11_48525')
f,ax = plt.subplots()
plot.colony(x,25900,colors,ax=ax)
plt.show()
1 maintainer
Metadata
1 maintainer
Release files for nufeb-tools 0.1.26
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| nufeb_tools-0.1.26.tar.gz | 28.5 MB | Without provenance | Details for nufeb_tools-0.1.26.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| nufeb_tools-0.1.26-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details for nufeb_tools-0.1.26-py2.py3-none-any.whl |
Total release size: 28.6 MB
Release files / nufeb_tools-0.1.26.tar.gz
| Download URL | nufeb_tools-0.1.26.tar.gz |
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| Size | 28.5 MB |
| Tags | Source |
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Release files / nufeb_tools-0.1.26-py2.py3-none-any.whl
| Download URL | nufeb_tools-0.1.26-py2.py3-none-any.whl |
|---|---|
| Size | 39.1 kB |
| Tags | Python 2 Python 3 |
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SHA-256 checksum How to use checksums |
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No |
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twine/4.0.1 CPython/3.9.13
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