Skip to main content

Python-based tools and utilities for NUFEB simulations

Project description

Documentation Status pypi Tox testing status DOI


Python-based tools and utilities for NUFEB simulations

Getting Started

Install via pip:

pip install nufeb-tools

Generate NUFEB simulations from the CLI:


Remove old runs:


Get data from a simulation for analysis

from nufeb_tools import utils
x = utils.get_data(test=True)

Plot the overall growth

from nufeb_tools import plot
import matplotlib.pyplot as plt
f, ax = plt.subplots()

Plot colonies based on initial seed cells

from nufeb_tools import utils, plot
import matplotlib.pyplot as plt
x = utils.get_data(directory=r'E:\sucrose\runs\Run_50_50_1.00e+00_1_2022-01-11_48525')
f,ax = plt.subplots()

Project details

Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

nufeb_tools-0.1.26.tar.gz (28.5 MB view hashes)

Uploaded source

Built Distribution

nufeb_tools-0.1.26-py2.py3-none-any.whl (39.1 kB view hashes)

Uploaded py2 py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page