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Python-based tools and utilities for NUFEB simulations

Project description

Documentation Status pypi Tox testing status


Python-based tools and utilities for NUFEB simulations

Getting Started

Install via pip:

pip install nufeb-tools

Generate NUFEB simulations from the CLI:


Remove old runs:


Get data from a simulation for analysis

from nufeb_tools import utils
x = utils.get_data(test=True)

Plot the overall growth

from nufeb_tools import plot
import matplotlib.pyplot as plt
f, ax = plt.subplots()

Plot colonies based on initial seed cells

from nufeb_tools import utils, plot
import matplotlib.pyplot as plt
x = utils.get_data(directory= r'D:\runs\Run_21_18_56_1_2021-07-12')
f,ax = plt.subplots()

Project details

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Files for nufeb-tools, version 0.0.51
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