Python-based tools and utilities for NUFEB simulations
Project description
Description
Python-based tools and utilities for NUFEB simulations
Getting Started
Install via pip:
pip install nufeb-tools
Generate NUFEB simulations from the CLI:
nufeb-seed
Remove old runs:
nufeb-clean
Get data from a simulation for analysis
from nufeb_tools import utils
x = utils.get_data(test=True)
Plot the overall growth
from nufeb_tools import plot
import matplotlib.pyplot as plt
f, ax = plt.subplots()
plot.overall_growth(x.biomass,ax=ax)
Plot colonies based on initial seed cells
from nufeb_tools import utils, plot
import matplotlib.pyplot as plt
x = utils.get_data(directory=r'E:\sucrose\runs\Run_50_50_1.00e+00_1_2022-01-11_48525')
f,ax = plt.subplots()
plot.colony(x,25900,colors,ax=ax)
plt.show()
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
nufeb_tools-0.1.2.tar.gz
(28.5 MB
view hashes)
Built Distribution
Close
Hashes for nufeb_tools-0.1.2-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9acc8172f5490165165f3d45b766c0ef426a67eb4b6e046320ef5b2b259a87bc |
|
MD5 | ef081a3a9da6ae3dfc2408618eb387e4 |
|
BLAKE2b-256 | 0a813011ac607d177f59c3f2cdd31558d5c5a8611a69d3783bb9b597221d7ea3 |