Python-based tools and utilities for NUFEB simulations
Project description
Description
Python-based tools and utilities for NUFEB simulations
Getting Started
Install via pip:
pip install nufeb-tools
Generate NUFEB simulations from the CLI:
nufeb-seed
Remove old runs:
nufeb-clean
Get data from a simulation for analysis
from nufeb_tools import utils
x = utils.get_data(test=True)
Plot the overall growth
from nufeb_tools import plot
import matplotlib.pyplot as plt
f, ax = plt.subplots()
plot.overall_growth(x.biomass,ax=ax)
Plot colonies based on initial seed cells
from nufeb_tools import utils, plot
import matplotlib.pyplot as plt
x = utils.get_data(directory=r'E:\sucrose\runs\Run_50_50_1.00e+00_1_2022-01-11_48525')
f,ax = plt.subplots()
plot.colony(x,25900,colors,ax=ax)
plt.show()
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
nufeb_tools-0.1.6.tar.gz
(28.5 MB
view hashes)
Built Distribution
Close
Hashes for nufeb_tools-0.1.6-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 95c4b4bd0f26ac704c5abac026e23230cb4825dfd8d80755ae4c25adb768b99d |
|
MD5 | 98adc42a66a861a7660934a237f0a356 |
|
BLAKE2b-256 | 3609407810eade71ba87d014531319f76b76896c394630c532426c0c07ff49c2 |