OakVar logo

OakVar: Genomic Variant Analysis Platform

Listen to Deep Dive into OakVar!: https://youtu.be/MNvDdL_p5s8

Mission

  • OakVar is a bridge between cutting-edge genomics research and everyday people.

  • OakVar democratizes access to genomics knowledge for all.

What it does

  • Annotate genomic variants with diverse annotation sources.

  • Make databases of annotated variants.

  • Query annotated variants with filter sets.

  • Make reports in diverse formats.

  • Visualize annotated variants with graphical user interface.

  • Works via CLI and GUI.

  • Easily develop, run, and distribute CLI and GUI genomics apps. OakVar acts as an operating system for genomics apps.

  • Connect genomic data to AI/ML models.

Internship

The main project will be OakVar. Full remote work. Unpaid position (no funding yet). Please send your application to info@oakbioinformatics.com.

Resources

Ready to start? OakVar Documentation

Subscribe to the mailing list: Be in the loop and notified of the new releases and news of OakVar.

Medium: https://medium.com/oakvar

Discord: https://discord.gg/wZfkTMKTjG

Reddit: https://www.reddit.com/r/oakvar

Email: info@oakbioinformatics.com

Many Thanks to Our Sponsors

Organizational Sponsors

Just DNA-Seq

Individual Sponsors

RegenCenter

OakVar is in CodeX

CodeX logo

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for oakbioinformatics from gravatar.com oakbioinformatics

Credits

Author: Ryangguk Kim

Requires

Python >=3.8

Tags

genomic variant analysis interpretation genome

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Source Distribution

oakvar-2.13.1.tar.gz (7.8 MB view details)

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