A genomic variant analysis platform

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for oakbioinformatics from gravatar.com oakbioinformatics

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • Author: Ryangguk Kim
  • Tags genomic, variant, analysis, interpretation, genome
  • Requires: Python >=3.8

Project description

OakVar logo

OakVar: Genomic Variant Analysis Platform

Mission

  • OakVar is a bridge between cutting-edge genomics research and everyday people.

  • OakVar democratizes access to genomics knowledge for all.

What it does

  • Annotate genomic variants with diverse annotation sources.

  • Make databases of annotated variants.

  • Query annotated variants with filter sets.

  • Make reports in diverse formats.

  • Visualize annotated variants with graphical user interface.

  • Works via CLI and GUI.

  • Easily develop, run, and distribute CLI and GUI genomics apps. OakVar acts as an operating system for genomics apps.

  • Connect genomic data to AI/ML models.

Internship

The main project will be OakVar. Full remote work. Unpaid position (no funding yet). Please send your application to info@oakbioinformatics.com.

Resources

Ready to start? OakVar Documentation

Subscribe to the mailing list: Be in the loop and notified of the new releases and news of OakVar.

Medium: https://medium.com/oakvar

Discord: https://discord.gg/wZfkTMKTjG

Reddit: https://www.reddit.com/r/oakvar

Email: info@oakbioinformatics.com

Many Thanks to Our Sponsors

Organizational Sponsors

Just DNA-Seq

Individual Sponsors

RegenCenter

OakVar is in CodeX

CodeX logo

License

OakVar is free to use for personal or research use in non-commercial activities by non-commercial entities. For other uses including commercial use by commercial entities, a paid license must be obtained. For full license information, see LICENSE.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for oakbioinformatics from gravatar.com oakbioinformatics

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • Author: Ryangguk Kim
  • Tags genomic, variant, analysis, interpretation, genome
  • Requires: Python >=3.8

Release history Release notifications | RSS feed

2.12.4

2.12.3

2.12.2

2.12.1

This version

2.11.26

2.11.25

2.11.24

2.11.23

2.11.22

2.11.21

2.11.20

2.11.19

2.11.18

2.11.17

2.11.16

2.11.15

2.11.14

2.11.13

2.11.12

2.11.11

2.11.10

2.11.9

2.11.8

2.11.7

2.11.5

2.11.4

2.11.3

2.11.2

2.11.1

2.11.0

2.10.4

2.10.3

2.10.2

2.10.1

2.9.128

2.9.127

2.9.126

2.9.125

2.9.124

2.9.123

2.9.122

2.9.119

2.9.118

2.9.117

2.9.116

2.9.114

2.9.113

2.9.112

2.9.111

2.9.110

2.9.109

2.9.108

2.9.106

2.9.104

2.9.103

2.9.102

2.9.101

2.9.100

2.9.99

2.9.98

2.9.97

2.9.96

2.9.95

2.9.94

2.9.93

2.9.92

2.9.91

2.9.90

2.9.89

2.9.88

2.9.87

2.9.86

2.9.85

2.9.84

2.9.83

2.9.82

2.9.81

2.9.80

2.9.78

2.9.77

2.9.76

2.9.75

2.9.72

2.9.71

2.9.70

2.9.69

2.9.68

2.9.64

2.9.63

2.9.62

2.9.61

2.9.60

2.9.59

2.9.58

2.9.57

2.9.56

2.9.55

2.9.54

2.9.53

2.9.52

2.9.51

2.9.48

2.9.46

2.9.45

2.9.44

2.9.43

2.9.42

2.9.41

2.9.40

2.9.39

2.9.38

2.9.37

2.9.36

2.9.34

2.9.33

2.9.32

2.9.31

2.9.30

2.9.29

2.9.28

2.9.27

2.9.26

2.9.24

2.9.23

2.9.22

2.9.21

2.9.20

2.9.19

2.9.18

2.9.17

2.9.15

2.9.14

2.9.12

2.9.10

2.9.9

2.9.7

2.9.6

2.9.5

2.9.4

2.9.3

2.8.40

2.8.39

2.8.38

2.8.37

2.8.36

2.8.35

2.8.34

2.8.33

2.8.32

2.8.31

2.8.30

2.8.29

2.8.28

2.8.27

2.8.26

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

2.8.1

2.8.0

2.7.44

2.7.43

2.7.42

2.7.41

2.7.40

2.7.39

2.7.38

2.7.37

2.7.36

2.7.35

2.7.34

2.7.33

2.7.32

2.7.31

2.7.30

2.7.29

2.7.28

2.7.27

2.7.26

2.7.25

2.7.24

2.7.23

2.7.22

2.7.21

2.7.20

2.7.19

2.7.18

2.7.17

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.8

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.1

2.7.0

2.6.3

2.6.2

2.6.1

2.6.0

2.5.66

2.5.65

2.5.64

2.5.63

2.5.62

2.5.61

2.5.60

2.5.59

2.5.58

2.5.57

2.5.56

2.5.55

2.5.54

2.5.53

2.5.52

2.5.51

2.5.50

2.5.49

2.5.48

2.5.47

2.5.46

2.5.45

2.5.44

2.5.43

2.5.42

2.5.41

2.5.40

2.5.39

2.5.38

2.5.37

2.5.36

2.5.35

2.5.34

2.5.32

2.5.31

2.5.30

2.5.29

2.5.28

2.5.27

2.5.26

2.5.25

2.5.24

2.5.23

2.5.22

2.5.21

2.5.20

2.5.19

2.5.18

2.5.17

2.5.16

2.5.15

2.5.14

2.5.13

2.5.12

2.5.11

2.5.10

2.5.9

2.5.8

2.5.7

2.5.6

2.5.5

2.5.4

2.5.3

2.5.2

2.5.1

2.4.8

2.4.7

2.4.6

2.4.5

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

oakvar-2.11.26.tar.gz (7.8 MB view details)

Uploaded Source

File details

Details for the file oakvar-2.11.26.tar.gz.

File metadata

  • Download URL: oakvar-2.11.26.tar.gz
  • Upload date:
  • Size: 7.8 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.0.0 CPython/3.12.3

File hashes

Hashes for oakvar-2.11.26.tar.gz
Algorithm Hash digest
SHA256 9c5895232e61090b01e0ca7daaa0ca77ea595eb4d7aa7d51ccadd4c07b6775f9
MD5 624f7e73210305d7cb0224b4f86aa1f2
BLAKE2b-256 762c7f0bac6f91ee41a38078f2f106a923561e1914fa32488daa6e2672f5ddd8

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page