Skip to main content


Project description


OGER wrapper for oaklib.



pip install oakx-oger
runoak -i oger:sqlite:obo:envo annotate "cultured organisms" "polar ecosystems" "atmospheric gas exchange"

How it works

This plugin implements an OGER wrapper.

There are two possible inputs to this wrapper:

  1. A .txt file [runoak -i oger:sqlite:obo:envo annotate --text-file text.txt]
  2. Words that need to be annotated.[runoak -i oger:sqlite:obo:envo annotate "cultured organisms" "polar ecosystems" "atmospheric gas exchange"]

Input ontologies generally used oaklib can be used with an oger: prefix. Note: This has been tested only with oger:sqlite:obo:* for now.


This cookiecutter project was developed from the oakx-plugin-cookiecutter template and will be kept up-to-date using cruft.

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

oakx-oger-0.1.0.tar.gz (5.5 kB view hashes)

Uploaded Source

Built Distribution

oakx_oger-0.1.0-py3-none-any.whl (6.3 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page