oakx-oger
Project description
oakx-oger
OGER wrapper for oaklib.
ALPHA
Usage
pip install oakx-oger
runoak -i oger:sqlite:obo:envo annotate "cultured organisms" "polar ecosystems" "atmospheric gas exchange"
How it works
This plugin implements an OGER wrapper.
There are two possible inputs to this wrapper:
- A
.txtfile [runoak -i oger:sqlite:obo:envo annotate --text-file text.txt] - Words that need to be annotated.[
runoak -i oger:sqlite:obo:envo annotate "cultured organisms" "polar ecosystems" "atmospheric gas exchange"]
Input ontologies generally used oaklib can be used with an oger: prefix.
Note: This has been tested only with oger:sqlite:obo:* for now.
Acknowledgements
This cookiecutter project was developed from the oakx-plugin-cookiecutter template and will be kept up-to-date using cruft.
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