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'A package for bayesian analysis of spatial occupancy models'

Project description


Documentation Status codecov zoj613 PyPI - Python Version PyPI PyPI - License

A package for fast bayesian analysis of spatial occupancy models. OccuSpytial implements several samplers for the single season site spatial occupancy model using the Intrinsic Conditional Autoregressive (ICAR) model for spatial random effects.


For usage examples refer to the project's documentation.


The package can be installed using pip.

pip install occuspytial

Alternatively, it can be installed from source using poetry

git clone
cd OccuSpytial/
poetry install

Note that installing this way requires that Cython is installed for a successful build.


To run tests after installation, the package pytest is required. Simply run the following line from the terminal in this package's root directory.

python -m pytest

If all tests pass, then you're good to go.


OccuSpytial is free software made available under the BSD License. For details see the LICENSE file.

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