Algorithms for diffraction tomography
Project description
ODTbrain provides image reconstruction algorithms for Optical Diffraction Tomography with a Born and Rytov Approximation-based Inversion to compute the refractive index (n) in 2D and in 3D.
Documentation
The documentation, including the reference and examples, is available at odtbrain.readthedocs.io.
Installation
pip install odtbrain
Testing
After cloning into odtbrain, create a virtual environment:
virtualenv --system-site-packages env source env/bin/activate
Install ODTbrain in editable mode:
pip install -e .
Running an example:
python examples/backprop_from_fdtd_2d.py
Running tests:
pip install pytest pytest tests
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