Algorithms for diffraction tomography
Project description
ODTbrain provides image reconstruction algorithms for Optical Diffraction Tomography with a Born and Rytov Approximation-based Inversion to compute the refractive index (n) in 2D and in 3D.
Documentation
The documentation, including the reference and examples, is available at odtbrain.readthedocs.io.
Installation
pip install odtbrain
Testing
After cloning into odtbrain, create a virtual environment
virtualenv --system-site-packages env source env/bin/activate
Install all dependencies
pip install -e .
Running an example
python examples/backprop_from_fdtd_2d.py
Running tests
python setup.py test
Project details
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