ogscm 1.2.0

OGS Container Maker

OGS Container Maker

General usage

Installation

virtualenv ~/.venv/ogs-container-maker
source ~/.venv/ogs-container-maker/bin/activate
pip install ogscm

Generate container definition

$ ogscm
Creating 1 image definition(s)...
Created definition _out/docker/ubuntu_17.10/ogs-4c7de6a4/serial/conan/cmake-d41d8cd9/Dockerfile 

# With user options
$ ogscm --format singularity --ompi 2.1.3 --cmake_args ' -DOGS_BUILD_PROCESSES=GroundwaterFlow'
Creating 1 image definition(s)...
Created definition _out/singularity/ubuntu_17.10/ogs-4c7de6a4/openmpi-2.1.3/conan/cmake-fde09bf7/Singularity.de

Build image

Add the --build-flag.

Convert Docker image to Singularity image:

Add the --convert-flag (requires Singularity 3.x).

Run

docker run --it --rm ogs-ompi-2.1.3
# in container:
ogs --version

singularity shell ogs-ompi-2.1.3.sif
# in container:
ogs --version
# OR directly run from host
singularity exec ogs-ompi-2.1.3.sif ogs local/path/to/square_1e0.prj

Using the combinatorial builder

Creates Docker definition files with different OpenMPI implementations and OpenGeoSys parallel configuration (from the current master), builds the docker images and converts them to Singularity images:

python build.py --ogs ufz/ogs@master --ompi 2.1.2 3.1.2 --build --convert

Check help for more options:

$ ogscm --help
usage: ogscm [-h] [--recipe RECIPE] [--out OUT] [--file FILE] [--print]
             [--format [{docker,singularity} [{docker,singularity} ...]]]
             [--pm [{system,conan} [{system,conan} ...]]]
             [--ompi [OMPI [OMPI ...]]] [--ogs [OGS [OGS ...]]]
             [--cmake_args [CMAKE_ARGS [CMAKE_ARGS ...]]] [--build] [--upload]
             [--registry REGISTRY] [--convert] [--runtime-only]
             [--base_image BASE_IMAGE] [--clang] [--gui] [--docs] [--jenkins]
             [--cvode] [--cppcheck] [--iwyy] [--gcovr] [--dev]
             [--compiler_version COMPILER_VERSION]

Generate container image definitions.

optional arguments:
  -h, --help            show this help message and exit
  --recipe RECIPE       HPCCM recipe (default: recipes/ogs-builder.py)
  --out OUT             Output directory (default: _out)
  --file FILE           Overwrite output recipe file name (default: )
  --print, -P           Print the definition to stdout (default: False)

Combinatorial options:
  All combinations of the given options will be generated

  --format [{docker,singularity} [{docker,singularity} ...]]
  --pm [{system,conan} [{system,conan} ...]]
                        Package manager to install third-party dependencies
                        (default: ['conan'])
  --ompi [OMPI [OMPI ...]]
                        OpenMPI version, e.g. 2.1.1, 2.1.5, 3.0.1, 3.1.2
                        (default: ['off'])
  --ogs [OGS [OGS ...]]
                        OGS GitHub repo in the form 'user/repo@branch' or
                        'off' to disable OGS building (default:
                        ['ufz/ogs@master'])
  --cmake_args [CMAKE_ARGS [CMAKE_ARGS ...]]
                        CMake argument sets have to be quoted and **must**
                        start with a space. e.g. --cmake_args ' -DFIRST=TRUE
                        -DFOO=BAR' ' -DSECOND=TRUE' (default: [''])

Image build options:
  --build, -B           Build the images from the definition files (default:
                        False)
  --upload, -U          Upload Docker image to registry (default: False)
  --registry REGISTRY   The docker registry the image is tagged and uploaded
                        to. (default: registry.opengeosys.org/ogs/ogs)
  --convert, -C         Convert Docker image to Singularity image (default:
                        False)
  --runtime-only, -R    Generate multi-stage Dockerfiles for small runtime
                        images (default: False)

Additional options:
  --base_image BASE_IMAGE
                        The base image. 'centos:7' is supported too. (default:
                        ubuntu:17.10)
  --clang               Use clang instead of gcc (default: False)
  --gui                 Builds the GUI (Data Explorer) (default: False)
  --docs                Setup documentation requirements (Doxygen) (default:
                        False)
  --jenkins             Setup Jenkins slave (default: False)
  --cvode               Install and configure with cvode (default: False)
  --cppcheck            Install cppcheck (default: False)
  --iwyy                Install include-what-you-use (default: False)
  --gcovr               Install gcovr (default: False)
  --dev                 Installs development tools (vim, gdb) (default: False)
  --compiler_version COMPILER_VERSION
                        Compiler version. (default: )