The preprocessing lib for olink data
Project description
olinkform
The preprocessing lib for olink data
Free software: MIT license
Documentation: https://olinkform.readthedocs.io.
Usage
Parse a data file
from olinkform import parse
result = parse(path, version)
# version v1 or v2 are supported,
# which are corresponding to the old and new olink formats, individually
The result is a dict with the following format
{
"sampleId": {
"markerId" : {
"batch": string
"value": float,
"LOD": float,
"MDF": float
}
}
}
Parse a data file to dataframe
from olinkform import parse_to_dataframe
df = parse_to_dataframe(path, version)
The result is a dataframe with columns:
['batch', 'sample_id','marker', 'value', 'LOD', 'MDF']
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2020-06-01)
First release on PyPI.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
olinkform-0.5.0.tar.gz
(925.1 kB
view hashes)
Built Distribution
Close
Hashes for olinkform-0.5.0-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8a4c96144f58f3680c18caf23550d3fe4e0c6637a3461166bd812a3acfbea4d7 |
|
MD5 | 7a2c6196f81eeae126e85fa3e2af7e78 |
|
BLAKE2b-256 | ae30e44c0f6755e547e8efa8bbe315c215e4cd7898c0203ae703b344042be85d |