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A Python client for the EBI Ontology Lookup Service RESTful API

Project description

A Python wrapper for accessing the RESTful API of the Ontology Lookup Service

Installation

Install the latest stable version from PyPI

$ python3 -m pip install ols_client

Install the latest version directly from GitHub

$ python3 -m pip install git+https://github.com/cthoyt/ols-client.git

Cookbook

Getting labels from ontology

>>> from ols_client import get_labels
>>> labels = get_labels('chebi')

Getting labels from ontology using an alternative OLS

>>> from ols_client import get_labels
>>> labels = get_labels('chebi', ols_base='http://lookup.scaiview.com/ols-boot/api/')

Using the CLI

$ python3 -m ols_client labels chebi > chebi.txt

Project details


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Files for ols-client, version 0.0.9
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