OMD Curation Toolkit
Project description
OMD Curation Toolkit
Omics Dataset Curation Toolkit (OMD Curation Toolkit) is a suite of programs designed for the download and curation of metadata and fastq files of public omics datasets. Centered on the European Nucleotide Archive (ENA), this workflow provides a standardized framework intended to facilitate the arduous task of curating public omics projects.
Getting started
For further details, see the following:
- Documentation (https://github.com/tbcgit/omdctk/wiki)
- Installation (https://github.com/tbcgit/omdctk/wiki/Installation)
- Tutorial Full Example (https://github.com/tbcgit/omdctk/wiki/Tutorial-Full-Example)
Acknowledgements
This package has been jointly developed in the Theory, Bioinformatics and Computation (https://www.uv.es/tbc) and Evolutionary Genetics (https://www.uv.es/symbiosis) research groups at the Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain. SPE is supported by an FPU grant from the Spanish Ministry of Universities (Reference: FPU20/05756).
License
This package is licensed under the MIT License. See the LICENSE file for details.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.