omero-mapr 0.1.6

MAPR is a Python plugin for OMERO.web

MAPR

An OMERO.web app allowing to browse the data through attributes linked to the image

Requirements

• OMERO 5.3 or newer.

Installing from Pypi

This section assumes that an OMERO.web is already installed.

Install the app using pip:

$ pip install omero-mapr

plug in the app to OMERO.web

$ bin/omero config append omero.web.apps '"omero_mapr"'

$ bin/omero config set omero.web.ui.top_links '[["IDR", {"viewname": "webindex", "query_string": {"experimenter": -1}}, {"title": "Image Data Repository"}], ["Genes", {"viewname": "maprindex_gene", "query_string": {"experimenter": -1}}, {"title": "Genes browser"}], ["Phenotypes", {"viewname": "maprindex_phenotype", "query_string": {"experimenter": -1}}, {"title": "Phenotypes browser"}], ["siRNA", {"viewname": "maprindex_sirna", "query_string": {"experimenter": -1}}, {"title": "siRNA browser"}], ["Compound", {"viewname": "maprindex_compound", "query_string": {"experimenter": -1}}, {"title": "Compound browser"}], ["Organism", {"viewname": "maprindex_organism", "query_string": {"experimenter": -1}}, {"title": "Organism browser"}]]'

Now restart OMERO.web as normal.

License

MAPR is released under the AGPL.

Copyright

2016, The Open Microscopy Environment