The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects.

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Sean.Davis from gravatar.com Sean.Davis

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License (MIT)

Author: Sean Davis

Tags genomics, bioinformatics, open data, API

Requires: Python >=3.7, <4.0

Classifiers

Project description

The author of this package has not provided a project description

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for Sean.Davis from gravatar.com Sean.Davis

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License (MIT)

Author: Sean Davis

Tags genomics, bioinformatics, open data, API

Requires: Python >=3.7, <4.0

Classifiers

Release history Release notifications | RSS feed

1.11.3

1.11.1

1.11.0

1.10.1

1.10.0

1.8.1

1.8.0

1.7.1

1.7.0

1.6.5

1.6.4

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.4.0

1.3.0

1.2.4

1.2.3

1.2.2

1.2.1

1.2.0

1.1.0.0

1.0.2.0

1.0.1.0

This version

1.0.0.0

0.9.0.9000

0.6.0

0.5.1

0.5.0

0.4.1

0.4.0

0.3.16

0.3.15

0.3.14

0.3.13

0.3.12

0.3.11

0.3.10

0.3.9

0.3.8

0.3.7

0.3.6

0.3.4

0.3.2

0.3.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

omicidx-1.0.0.0.tar.gz (36.7 kB view hashes)

Uploaded Source

Built Distribution

omicidx-1.0.0.0-py3-none-any.whl (46.5 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page