Skip to main content

Extensible computational pipeline for running next generation sequencing analyses

Project description

Omics pipe is an open-source, modular computational platform that automates ‘best practice’ multi-omics data analysis pipelines published in Nature Protocols and other commonly used pipelines, such as GATK. It currently automates and provides summary reports for two RNAseq and miRNAseq pipelines, variant calling from whole exome sequencing (WES), variant calling and copy number variation analysis from whole genome sequencing (WGS), two ChIPseq pipelines and a custom RNAseq pipeline for personalized genomic medicine reporting. It also provides automated support for interacting with the The Cancer Genome Atlas (TCGA) datasets, including automatic download and processing of the samples in this database.

Project details


Release history Release notifications

History Node

1.1.3

This version
History Node

1.1.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
omics_pipe-1.1.0.tar.gz (3.5 MB) Copy SHA256 hash SHA256 Source None Jul 10, 2014
omics_pipe-1.1.3.tar.gz (14.7 MB) Copy SHA256 hash SHA256 Source None Aug 23, 2014

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging CloudAMQP CloudAMQP RabbitMQ AWS AWS Cloud computing Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page