Python package and CLI for The OPTIMAM Mammography Image Database (OMI-DB)
Project description
OMI-DB
A command-line interface and Python package to work with the OPTIMAM Mammography Image Database.
Note: This project is still in early development, and should be considered experimental (pre-alpha) until the OMI-DB NBSS data has been fully modelled, and a stable API has been established. Issues and feedback are welcome: please raise an issue.
Installation
You will need version >=3.7 of Python.
For the CLI only, we recommend pipx:
pipx install omidb
To install the package in your project, use your package/dependency manager of choice and add omidb
.
For development, we recommend cloning the repository and installing using pdm
git clone https://bitbucket.org/scicomcore/omi-db.git
pdm install
You can then run the utility scripts using pdm run
, for example
pdm run omidb
Tests can be executed using
pdm run pytest tests
Examples
Please see the example scripts under ./examples
. A local copy of OMI-DB JSON data will be required.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.